Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs7523752 chr1:26556751 T/C 1.58E-5 513 6.8 20.72 22.1 KM Plot
HNSC rs7533756 chr1:26569803 T/G 1.93E-5 509 6.8 21.37 22.02 KM Plot
HNSC rs75437042 chr21:48075143 C/G 4.71E-9 513 21.52 21.02 2.73 KM Plot
HNSC rs75449975 chr21:48091017 T/C 4.66E-9 510 21.52 21.5 2.73 KM Plot
HNSC rs7552105 chr1:26592573 A/G 1.75E-5 515 6.8 20.58 22.1 KM Plot
HNSC rs7567230 chr2:99903953 G/A 9.2E-7 513 7 20.77 22.27 KM Plot
HNSC rs7567462 chr2:99881228 T/C 9.26E-7 513 7 20.48 22.2 KM Plot
HNSC rs7579171 chr2:99920862 A/C 3.74E-6 510 7.17 20.48 22.5 KM Plot
HNSC rs7581337 chr2:99896371 A/G 9.2E-7 513 7 20.77 22.27 KM Plot
HNSC rs7582085 chr2:100054140 T/A 2.97E-6 514 22.33 20.15 7.17 KM Plot
HNSC rs7582133 chr2:100053523 C/A 2.97E-6 514 22.33 20.15 7.17 KM Plot
HNSC rs7584022 chr2:99926297 T/C 3.57E-5 514 9.77 20.15 22.58 KM Plot
HNSC rs7584705 chr2:99896978 A/C 9.2E-7 513 7 20.77 22.27 KM Plot
HNSC rs7585532 chr2:100107778 G/T 1.43E-6 512 22.2 20.48 7.17 KM Plot
HNSC rs75860302 chr21:48076712 G/A 4.71E-9 513 21.52 21.02 2.73 KM Plot